Package: TiPS 1.2.3
TiPS: Trajectories and Phylogenies Simulator
Generates stochastic time series and genealogies associated with a population dynamics model. Times series are simulated using the Gillespie exact and approximate algorithms and a new algorithm we introduce that uses both approaches to optimize the time execution of the simulations. Genealogies are simulated from a trajectory using a backwards-in-time based approach. Methods are described in Danesh G et al (2022) <doi:10.1111/2041-210X.14038>.
Authors:
TiPS_1.2.3.tar.gz
TiPS_1.2.3.zip(r-4.5)TiPS_1.2.3.zip(r-4.4)TiPS_1.2.3.zip(r-4.3)
TiPS_1.2.3.tgz(r-4.4-x86_64)TiPS_1.2.3.tgz(r-4.4-arm64)TiPS_1.2.3.tgz(r-4.3-x86_64)TiPS_1.2.3.tgz(r-4.3-arm64)
TiPS_1.2.3.tar.gz(r-4.5-noble)TiPS_1.2.3.tar.gz(r-4.4-noble)
TiPS_1.2.3.tgz(r-4.4-emscripten)TiPS_1.2.3.tgz(r-4.3-emscripten)
TiPS.pdf |TiPS.html✨
TiPS/json (API)
| # Install 'TiPS' in R: |
| install.packages('TiPS', repos = c('https://gonchedanesh.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:e1dd5a5a04. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 07 2024 |
| R-4.5-win-x86_64 | OK | Nov 07 2024 |
| R-4.5-linux-x86_64 | OK | Nov 07 2024 |
| R-4.4-win-x86_64 | OK | Nov 07 2024 |
| R-4.4-mac-x86_64 | OK | Nov 07 2024 |
| R-4.4-mac-aarch64 | OK | Nov 07 2024 |
| R-4.3-win-x86_64 | OK | Nov 07 2024 |
| R-4.3-mac-x86_64 | OK | Nov 07 2024 |
| R-4.3-mac-aarch64 | OK | Nov 07 2024 |
Exports:build_simulatorplot.simutrajsimulate_tree
Dependencies:cligluegtoolsinlinelifecyclemagrittrRcpprlangstringistringrvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Build a simulator of dynamics of population-model | build_simulator |
| Plot an object of class 'simutraj'. | plot.simutraj |
| Simulates a phylogeny using a beackward-in-time process using sampling dates and a trajectory | simulate_tree |
