Package: TiPS 1.2.3

TiPS: Trajectories and Phylogenies Simulator

Generates stochastic time series and genealogies associated with a population dynamics model. Times series are simulated using the Gillespie exact and approximate algorithms and a new algorithm we introduce that uses both approaches to optimize the time execution of the simulations. Genealogies are simulated from a trajectory using a backwards-in-time based approach. Methods are described in Danesh G et al (2022) <doi:10.1111/2041-210X.14038>.

Authors:Gonche Danesh [aut, cre, cph], Emma Saulnier [aut, cph], Olivier Gascuel [aut, cph], Marc Choisy [aut, cph, ths], Samuel Alizon [aut, cph, ths]

TiPS_1.2.3.tar.gz
TiPS_1.2.3.zip(r-4.5)TiPS_1.2.3.zip(r-4.4)TiPS_1.2.3.zip(r-4.3)
TiPS_1.2.3.tgz(r-4.4-x86_64)TiPS_1.2.3.tgz(r-4.4-arm64)TiPS_1.2.3.tgz(r-4.3-x86_64)TiPS_1.2.3.tgz(r-4.3-arm64)
TiPS_1.2.3.tar.gz(r-4.5-noble)TiPS_1.2.3.tar.gz(r-4.4-noble)
TiPS_1.2.3.tgz(r-4.4-emscripten)TiPS_1.2.3.tgz(r-4.3-emscripten)
TiPS.pdf |TiPS.html✨
TiPS/json (API)

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3 exports 1.24 score 11 dependencies 4 mentions 7 scripts 210 downloads

Last updated 1 years agofrom:e1dd5a5a04. Checks:OK: 9. Indexed: yes.

Exports:build_simulatorplot.simutrajsimulate_tree

Dependencies:cligluegtoolsinlinelifecyclemagrittrRcpprlangstringistringrvctrs