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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "TiPS" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'TiPS: Trajectories and Phylogenies Simulator'
version: 1.2.3
identifiers:
- type: doi
  value: 10.32614/CRAN.package.TiPS
- type: url
  value: https://gitlab.in2p3.fr/ete/tips/
abstract: Generates stochastic time series and genealogies associated with a population
  dynamics model. Times series are simulated using the Gillespie exact and approximate
  algorithms and a new algorithm we introduce that uses both approaches to optimize
  the time execution of the simulations. Genealogies are simulated from a trajectory
  using a backwards-in-time based approach. Methods are described in Danesh G et al
  (2022) <https://doi.org/10.1111/2041-210X.14038>.
authors:
- family-names: Danesh
  given-names: Gonche
  email: gonche.danesh@gmail.com
- family-names: Saulnier
  given-names: Emma
- family-names: Gascuel
  given-names: Olivier
- family-names: Choisy
  given-names: Marc
- family-names: Alizon
  given-names: Samuel
preferred-citation:
  type: article
  title: 'TiPS: simulating trajectories and phylogenies from population dynamics models'
  authors:
  - family-names: Danesh
    given-names: G.
  - family-names: Saulnier
    given-names: E.
  - family-names: Gascuel
    given-names: O.
  - family-names: Choisy
    given-names: M.
  - family-names: Alizon
    given-names: S.
  journal: Methods in Ecology and Evolution
  year: '2022'
  url: https://doi.org/10.1111/2041-210X.14038
repository: https://gonchedanesh.r-universe.dev
commit: e1dd5a5a044abf9c401ad8d7c334094fa72e678d
url: https://gitlab.in2p3.fr/ete/tips
date-released: '2023-05-12'
contact:
- family-names: Danesh
  given-names: Gonche
  email: gonche.danesh@gmail.com